Self-paced tutorial · UCSC Genome Browser
Tutorial 2: Cancer Data — Contents
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Welcome
1
Title
2
What we'll cover
3
Where the cancer data lives
Somatic variants
5
CIViC: Clinical Interpretation of Variants in Cancer
6
CIViC: click a feature for the details
7
CIViC: the page for BRAF V600E
8
CIViC: the evidence behind each call
9
COSMIC: Catalogue of Somatic Mutations in Cancer
10
ClinVar: variant-disease classifications
11
ClinVar database link
12
TCGA Pan-Cancer
Germline variants
14
GenCC: the Gene Curation Coalition
15
GenCC: click through to the source
16
OMIM: Online Mendelian Inheritance in Man
17
gnomAD: Genome Aggregation Database
Wrap-up
18
Where to next
19
Thank you